The clips attach to the R/S molding, so you should not see a picture with them attached to just the door. If someone wants pointers on drilling/locating the holes, I would be happy to help with that. But, here are some pointers that will save you a lot of time if I already assume you have the holes correct.
If you car came from the body shop and you have replaced quarters and/or fenders, install the molding on the door first, but install the ROCKER (long skinney molding) before you do any of the R/S Moldings. It will give you a straight frame of reference. Once you have the long rocker molding installed, do the door next. The large (R/S) moldings get in the way most of the time if you put the R/S moldings on first. I wrote a thread on how to install the Rocker Moldings, if you are replacing them new (or old).
http://www.camaros.net/forums/showthread.php?t=141747&highlight=rocker
Large (R/S) Molding:
Here is the trick that will save you a lot of time, especially if you use new clips like Ricks carries or Classic Industries.
Flatten these clips a little first. Flatten them at the bend where my two fingers are. You will see that this will give them MORE pressure against the door when you tighten them down. Aftermarket nuts for the clips suck. If you have the original ones use them. If not, the new ones will work but they are different (a little small) and not as good. Put a little ball of strip caulk or dumb/dumb puddy at the base of the stud so that as you tighten them on, the puddy fills the holes. You want this to seal the water that may try to run through these holes. Don't tighten yet, just leave snug. Visually make sure it is ok, then tighten down. If you don't have the original outer screws for the R/S DOOR moldings, the correct screws for the wheel (stainless) moldings are a pretty good match to the original. Also, remember that these outer screws had an original plastic washer with them. You can get those at your local hardware store if yours are missing.
The original clips on the R/S Molding Clips had plastic on them. It was used as a spacer and a clip lock. I used carpet tape as the spacer to fill up some of the gap on the inside. Sorry, I did not take a picture of that for you.
Also, remember that even the
ORIGINAL R/S moldings did not line up with the door moldings the way we would expect them today. So visually move the quarter and fender moldings till you get them in a good visual location. You will want to say that the aftermarket ones suck if you bought them, but if you had NOS or your original ones, you would say they suck also if you were installing them from scratch.
. The clips that go on the door seems to be a little small, maybe if I bend them like you said they will adhere better to the body. It is worth a try. 
